R packages Maintained by Jing Hua Zhao

I have actively matained packages gap, lmm, pan and tdthap on CRAN or its mirror sites but keep CGR and kinship here. The commands for installation (CGR was a bundle and no longer supported by recent versions of R) are as follows,

> install.packages("kinship",contriburl="http://people.ds.cam.ac.uk/jhz22/software")
> install.packages("kinship","R",contriburl="http://people.ds.cam.ac.uk/jhz22/software") # under Unix/Linux, where "R" is a user directory

It is also possible to install these packages, both archived and active, from GitHub, e.g.,

> library(devtools)
>
install_github(“cran/kinship”)

Here are some frequently-asked questions (FAQs)

The associate R program generates the gaw14.dot files which are converted to .pdf by graphviz/Gvedit.

Source Raw data dot program dot diagram fdp diagram
GAW14 gaw14.pre gaw14.dot dot.pdf fdp.pdf

 

 

Packages

Bundle:

CGR (Windows version)

Version:

1.0-5

Date:

2006-5-22

Title:

Classic Genetics in R

Author:

Jing hua Zhao in collaboration with other colleagues

BundleDescription:

This is an experimental package bundle based on the R packages pathmix and pointer.

License:

Programs included in this package by Jing hua Zhao will be under GPL. Specific requirement may be possible for programs written by other authors.

Name:

kinship (Windows version)

Version:

1.1.4

Date:

2012-10-15

Title:

mixed-effects Cox models, sparse matrices, and modeling data from large pedigrees

Author:

Beth Atkinson (atkinson@mayo.edu) for pedigree functions. Terry Therneau (therneau@mayo.edu) for all other functions.

Depends:

survival, nlme, lattice

Description:

coxme: general mixed-effects Cox models; kinship: routines to create and manipulate n by n matrices that describe the genetic relationships between n persons; pedigree: create and plot pedigrees; bdsmatrix: a class of objects for sparse block-diagonal matrices (which is how kinship matrices are stored); gchol: generalized cholesky decompositions.

License:

GPL (>=2)

Date last changed 16/3/2016