I have actively matained packages gap, lmm, pan and tdthap on CRAN or its mirror sites but keep CGR and
kinship here. The commands for installation (CGR was a bundle and no
longer supported by recent versions of R) are as follows,
>
install.packages("kinship",contriburl="http://people.ds.cam.ac.uk/jhz22/software")
>
install.packages("kinship","R",contriburl="http://people.ds.cam.ac.uk/jhz22/software")
# under Unix/Linux, where "R"
is a user directory
It is also possible to install these packages, both archived and active, from GitHub, e.g.,
>
library(devtools)
> install_github(“cran/kinship”)
Here are some frequently-asked questions (FAQs)
The associate R program generates the gaw14.dot files which are converted to .pdf by graphviz/Gvedit.
| Source | Raw data | dot program | dot diagram | fdp diagram |
| GAW14 | gaw14.pre | gaw14.dot | dot.pdf | fdp.pdf |
Packages
Bundle: Version: 1.0-5 Date: 2006-5-22 Title: Classic Genetics in R Author: Jing hua Zhao in collaboration with other
colleagues BundleDescription: This is an experimental package bundle based on the R
packages pathmix and pointer. License: Programs included in this package by Jing hua Zhao will
be under GPL. Specific requirement may be possible for programs written by
other authors. Name: Version: 1.1.4 Date: 2012-10-15 Title: mixed-effects Cox models, sparse matrices, and modeling
data from large pedigrees Author: Beth Atkinson (atkinson@mayo.edu) for pedigree
functions. Depends: survival, nlme, lattice Description: coxme: general mixed-effects Cox models; kinship:
routines to create and manipulate n by n matrices that describe the
genetic relationships between n persons; pedigree: create and plot
pedigrees; bdsmatrix: a class of objects for sparse block-diagonal
matrices (which is how kinship matrices are stored); gchol: generalized
cholesky decompositions. License: GPL (>=2)
Date last changed 16/3/2016